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About The School

Contemporary medicine, pharma, and biotech have largely been transformed into data-dependent ventures, where large-scale biological data analysis is the cornerstone of success. Consequently, technologies that have revolutionized bio-related research and industries, such as large-scale sequencing have posed the challenge of having enough specialists able to transform data into knowledge (bioinformaticians). Training specialists in the field of bioinformatics and genomics is thus of tremendous importance to life science research and innovation.

In Armenia, some BSc programs offer courses in bioinformatics and genomics, such as those in the Russian-Armenian University and the American University of Armenia. However, there is a huge knowledge gap that most of the students need to bridge to gain relevant skills to conduct research in bioinformatics. It is a critical problem to meet these needs and prepare a new generation of young bioinformatics researchers. Importantly, there is a huge talent and potential among the students at the undergraduate level, but lack of post-graduate opportunities. And this is the main challenge that the Armenian Bioinformatics Institute (ABI) is solving.

In response to this challenge, ABI in collaboration with the Bioinformatics Group at the Institute of Molecular Biology (IMB) NAS RA is organizing the second summer school in genome bioinformatics: OMICSS-2022. The program envisions recruitment of up to 20 students from biology, math, data, and computer science background to engage them in everyday learning activities and hands-on training exercises. Each student will be associated with an individual ABI mentor and will take the educational resources found in the OMICSS-2021 guide developed by ABI. The students’ learning will be self-paced, at the same time receiving individual guidance from the mentors. The mentors will take into account the background of each student and will shape the self-learning program and the exercises accordingly. In addition, the mentors will facilitate knowledge exchange between peer students with complementary backgrounds (biology versus tech) through frequent meet-ups and peer-to-peer discussions.

Around 40 researchers and biotech industry specialists from Armenia and abroad will join the program to deliver guest lectures and to get to know the students. Ultimately, a few students will be chosen to continue their research under the supervision of the guest scientists.

The school is intended for biologists or data/computer scientists eager to start their journey in bioinformatics and genomics. This school offers a possibility to learn about the role of bioinformatics in research and development in life sciences, and gain the basic knowledge and skills needed to start their first bioinformatics project. The school also provides a unique opportunity to meet scientists from Armenia and abroad who will join with guest lectures and seminars.

After the School

During the school, the students will gain general knowledge about bioinformatics and will acquire skills enabling them to start their journey in bioinformatics research. They will get to know peers with similar interests and will gain a valuable network that will help them in the initial stages of their careers.

Up to 10 students will be selected after successful completion of the school and the workshop and will become research students at ABI, some will be offered travel opportunities to participate in a 2-month-long bioinformatics school in Sweden, or to get engaged in master’s and bachelor’s projects offered by ABI and other universities in Belgium, Netherlands, US, etc. A limited number of scholarships will be available to support the research activities of those students.

Most of the graduates of OMICSS-2021 school conducted last year are currently involved in research projects at ABI (around 10 students), or other research institutions in Armenia. Around 8 researchers who have provided seminars in the OMICSS-2021 school have been supervising the ABI students throughout the last year. OMICSS-2021 has been the Bing Bang event for ABI, enabling us to exponentially increase the number of young researchers in the field and engage life scientists from the world, and we expect to achieve the same impact with OMICSS-2022.

Bioinformatics Workshop

In the final month, the students who successfully pass all exams will participate in a week-long bioinformatics workshop outside of Yerevan, where experienced researchers from Armenia and abroad will be invited. During the workshop, the students will conduct short bioinformatics projects, receive mentorship from senior researchers, and will present their results in a final presentation.

Program

Foundational Knowledge: Dive into the essentials of molecular biology, programming, and statistics.

Bioinformatics skills: Learn about cutting-edge sequencing technologies, next-generation sequencing data analysis, and the bioinformatics algorithms vital for big data analysis in genomics.

Expert Insight: Gain perspective from leading figures in the field, with invited speakers from  institutes worldwide sharing their knowledge, research, and the vast array of career opportunities in bioinformatics.

Networking Opportunities: Connect with peers, mentors, and leaders, opening doors to collaborations and career advancements.

Hands-On Experience: Engage in daily learning activities and practical exercises designed to solidify your knowledge and skills.

Bioinformatics Bootcamp: The school will end in a ten-day journey through your first bioinformatics project, where you and your team will analyze genomics data and present the findings to your peers and school speakers at a 3 to 4 day bootcamp that will take place in Dilijan or in Sevan.

Pathway to Internship: Successful completion of OMICSS-24 could be your gateway to an exciting internship at ABI, offering real-world experience in the field of bioinformatics.

Week 1 - 4
Introduction to programming in RBasics of molecular biology
Midterm test #1 and #2
Statistics: fundamentals
Wet lab technologies: PCR, sequencing (3 generations)
Midterm test #3
Week 5 - 6
Week 7 - 9
Linux command lineNGS data analysis: algorithms, standard formats, standard tools
Final test
Week 10 - 11
Bioinformatics workshop and final projects
Project Presentations

Everyday schedule

All students are required to participate in one-on-one meetings with mentors, as well as office hours and peer-to-peer discussions, and take part in guest lectures. Those who complete all the midterm exams will have the opportunity to continue with the school. In weeks 7 to 9 the students will have the opportunity to gain experience at the wet lab and learn about experimental techniques for the generation of -omics data. These weeks will also be rich with in-person seminars and practical work. The last couple of weeks will be devoted to mini-research projects conducted at the final workshop outside of Yerevan.

Participants will have an opportunity to learn at their own pace. For people that are employed elsewhere, the first half of the day is optional, as the school offers a hybrid learning format, particularly in the first 6 weeks. But they will need to tailor their schedule to be able to participate in the guest lectures, discussions, and experimental hours.

Timeline

  • Applications open: April 9
  • Early bird registration: May 5
  • Early bird selection: May 13
  • Late bird registration: May 26
  • Late bird selection: June 3

Organizers

Lilit Nersisyan, Founding Director of ABI, Yerevan, Armenia

Maria Nikoghosyan, IMB NAS, Yerevan, Armenia

Siras Hakobyan, IMB NAS, Yerevan, Armenia

Alisa Hovsepyan, Yerevan, Armenia

Sona Melikjanyan, Yerevan, Armenia

Sylabus

Topics

  • School opening and welcome party (June 21)
  • Introduction to Molecular Biology (June 24 – July 5)
  • Basics of Statistics (with programming) (July 8 – July 19)
  • Bioinformatics algorithms (with programming) (July 22 – July 29)
  • Experimental techniques in molecular biology (with lab practice) (July 30 – August 2)
  • Bioinformatics, Functional Genomics & Linux command line (August 5 – August 15)
  • Final projects (August 16 – August 24)
  • Bioinformatics Bootcamp (August 21 – August 24)

Who can apply

Students, graduates and young researchers with basic knowledge of biology OR basic programming skills (R, Python, etc.) are welcome to apply. Basic knowledge of English is a prerequisite.

Registration

Registration deadline: 01 June 2022

Interviews: 03 June 2022

Notifications of acceptance: 06 June 2022

Payment deadline: 08 June 2022

Start date: 14 June 2022
End date: 25 August 2022

Registration fee of 10000 AMD should be made via bank transfer. The details will be sent out to accepted participants.

*fee includes: welcome gifts and access to learning materials and resources.

Apply

Venue

Institute of Molecular Biology, 7 Ezras Hasratyan Street (Kanaker-Zeytun), Yerevan, Armenia

IMB is located in Kanaker-Zeytun district, 200m to the left of the Mikaelyan Institute of Surgery. Please note, the street name is Ezras Hasratyan street, not to mix it with Grigor Hasratyan street which is located on the other side of the city. Microbuses number 99 and 33 pass right in front of the building.

Partners

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