Routine data processing

We don’t just deliver tables and plots for standard bioinformatics analyses. We engage with you every step of the way—explaining our process, adjusting our methods, and offering suggestions—to make sure the analysis truly fits your research objectives.

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• NGS data preprocessing: quality control, alignment, deduplication
• Variant calling: SNV/indel discovery, annotation, and filtering
• Gene expression analysis: differential expression (bulk & single-cell), clustering, PCA
• Pathway & functional analysis: GO, KEGG, GSEA, network topology-based analysis

Data types supported: WGS, WES, RNA-seq, ChIP-seq, ATAC-seq, etc.

Sequencing Services

If you'd prefer to have sequencing and analysis under one roof, we've got you covered. We offer end-to-end support using the following platforms:

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• Illumina (short-read NGS)
• Oxford Nanopore (long-read sequencing)

Services include base calling, demultiplexing, read correction, and downstream analysis tailored to your experimental goals.

Advanced Bioinformatics & Custom Projects

If you'd prefer to have sequencing and analysis under one roof, we've got you covered. We offer end-to-end support using the following platforms:

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• Cancer omics
  • Mutational signatures
  • TCGA-style cohort analysis, survival analysis, diagnostic/prognostic gene signatures
  • Dimensionality reduction (e.g., using Self-Organizing Maps) and marker gene set identification, clustering
  • Multi-omics data integration 
  • Tumor heterogeneity
• microRNA analysis
  • State-of-the-art small RNA-seq expression quantification
  • Target prediction
  • Co-regulatory networks
  • Disease enrichment
• Telomere biology
  • Telomere length estimation from NGS
  • Telomeric repeat variant detection
  • Estimation of telomere maintenance mechanisms (ALT vs. telomerase)
• Microbiome analysis
  • 16S and metagenomic profiling
  • Disease associations
  • Co-abundance and interaction networks
  • Functional annotation
  • Antibiotic resistance analysis

See our publications for use cases and results from these analyses.

Custom Software & Database Development

Need something that doesn’t exist yet? We also build:

• Custom analysis pipelines (command-line or GUI)
• Custom stand-alone software tools
• Interactive dashboards & visualizations
• Searchable databases with user-friendly front ends